STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3887PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc3138 probable oxidoreductase protein. (264 aa)    
Predicted Functional Partners:
Acid_3886
PFAM: OsmC family protein; KEGG: rsp:RSP_0585 osmotically inducible protein OsmC.
  
    0.700
Acid_3077
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0465 beta-ketoacyl synthase.
  
 
 0.685
Acid_3888
Hypothetical protein.
       0.560
Acid_3889
KEGG: bur:Bcep18194_C6643 hypothetical protein.
       0.560
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 
 0.546
Acid_3885
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
   0.533
Acid_3883
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase.
  
 
 0.527
Acid_2865
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ppr:PBPRB1531 hypothetical oxidoreductase, short-chain dehydrogenase/reductase family.
  
     0.509
Acid_3882
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rba:RB8728 putative oxidoreductase.
 
    
0.505
Acid_3884
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aba:Acid345_2516 anti-sigma-factor antagonist.
       0.488
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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