STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3951PFAM: sulfatase; KEGG: sco:SCO7547 sulfatase. (516 aa)    
Predicted Functional Partners:
Acid_7564
PFAM: protein of unknown function DUF323; KEGG: bja:bll4742 hypothetical protein.
 
   0.686
Acid_6646
PFAM: Radical SAM domain protein; KEGG: bth:BT0238 transcriptional regulator.
 
   0.671
Acid_3952
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction.
       0.658
Acid_3953
PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein, putative related to sulfatases.
       0.658
Acid_4849
PFAM: Radical SAM domain protein; KEGG: mac:MA2647 arylsulfatase regulator.
 
   0.640
Acid_3950
PFAM: oxidoreductase domain protein; KEGG: rba:RB9026 probable NADH-dependent dyhydrogenase.
  
    0.561
Acid_2851
PFAM: Radical SAM domain protein; KEGG: vpa:VPA0684 putative arylsulfatase regulator.
 
   0.500
Acid_0031
PFAM: protein of unknown function DUF323; KEGG: ilo:IL0380 secreted protein with uncharacterized domain.
 
   0.485
Acid_5241
PFAM: protein of unknown function DUF323; KEGG: sco:SCO7548 hypothetical protein.
 
   0.458
Acid_3388
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll2660 hypothetical protein.
  
     0.450
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.