Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Acid_3979Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: psb:Psyr_4228 regulatory protein, GntR:bacterial regulatory protein, GntR. (242 aa)    
Predicted Functional Partners:
Acid_3978
PFAM: major facilitator superfamily MFS_1; KEGG: aba:Acid345_3034 major facilitator superfamily (MFS) transporter.
 
   
 0.825
Acid_0195
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ttj:TTHA1580 transcriptional regulator, GntR family.
 
  
 0.811
Acid_3977
KEGG: aba:Acid345_0428 hypothetical protein.
  
    0.784
Acid_3980
PFAM: HpcH/HpaI aldolase; KEGG: bur:Bcep18194_B1777 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
    0.780
Acid_0668
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7168 GntR-family transcriptional regulator.
 
  
 0.745
Acid_0250
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pae:PA0155 transcriptional regulator PcaR.
 
  
 0.632
Acid_5151
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; iron dependent repressor; UbiC transcription regulator-associated domain protein; KEGG: gka:GK2275 transcriptional regulator (GntR family).
  
  
 0.575
Acid_1941
PFAM: regulatory proteins, IclR; KEGG: mta:Moth_0417 transcriptional regulator, IclR family.
 
  
 0.521
Acid_1740
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: bja:blr5874 D-galactarate dehydratase.
 
   
 0.518
Acid_2737
PFAM: regulatory proteins, IclR; KEGG: mta:Moth_1780 transcriptional regulator, IclR family.
 
  
 0.503
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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