STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3998PFAM: Late embryogenesis abundant protein; KEGG: mlo:mlr9697 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Acid_0184
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gka:GK1868 assimilatory nitrite reductase subunit.
  
 
 0.868
Acid_3685
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cgb:cg2999 putative ferredoxin reductasetase.
  
 
 0.868
Acid_3181
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sat:SYN_02272 uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase.
  
  
 0.766
Acid_3883
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase.
  
 
 0.728
Acid_3999
PFAM: protein of unknown function DUF1469; KEGG: tfu:Tfu_2992 hypothetical protein.
       0.723
Acid_4000
Hypothetical protein.
       0.718
Acid_6403
SMART: TRASH domain protein; KEGG: sat:SYN_02164 hypothetical membrane protein.
   
   0.669
Acid_3997
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ana:alr3393 similar to serum-resistance protein BrkB.
       0.551
Acid_0181
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aae:aq_207 uroporphyrin-III C-methyltransferase.
  
  
 0.485
Acid_1637
KEGG: jan:Jann_3567 hypothetical protein.
  
  
 0.478
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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