Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Acid_4010Alpha-L-arabinofuranosidase-like protein; KEGG: tma:TM0281 alpha-L-arabinofuranosidase. (500 aa)    
Predicted Functional Partners:
uxaC
PFAM: Glucuronate isomerase; KEGG: bth:BT0823 uronate isomerase.
   
 
 0.819
xylA
KEGG: bxe:Bxe_B2622 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
    
 0.806
Acid_7301
PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: aba:Acid345_0579 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
     
 0.803
Acid_6718
PFAM: GHMP kinase; KEGG: dre:569254 hypothetical protein LOC569254.
     
  0.800
Acid_7770
PFAM: glycoside hydrolase, family 28; KEGG: rso:RSp0880 polygalacturonase precursor (pectinase) signal peptide protein; Belongs to the glycosyl hydrolase 28 family.
     
  0.800
Acid_6773
Alpha-L-arabinofuranosidase-like protein; KEGG: bsu:BG11900 alpha-L-arabinofuranosidase 1 (arabinosidase).
  
     0.775
Acid_4011
KEGG: aba:Acid345_1726 hypothetical protein.
       0.773
Acid_4012
KEGG: bth:BT0997 hypothetical protein.
       0.773
Acid_7231
PFAM: protein of unknown function DUF1680; KEGG: bth:BT3674 hypothetical protein.
 
   
 0.749
Acid_3381
PFAM: protein of unknown function DUF1680; KEGG: bth:BT3674 hypothetical protein.
 
   
 0.747
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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