Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4012KEGG: bth:BT0997 hypothetical protein. (747 aa)    
Predicted Functional Partners:
Acid_4010
Alpha-L-arabinofuranosidase-like protein; KEGG: tma:TM0281 alpha-L-arabinofuranosidase.
       0.773
Acid_4011
KEGG: aba:Acid345_1726 hypothetical protein.
       0.773
Acid_2672
KEGG: sth:STH2501 hypothetical protein.
  
     0.763
Acid_7648
KEGG: ape:APE0340 hypothetical protein.
  
     0.756
Acid_6550
UTP--glucose-1-phosphate uridylyltransferase-like protein; KEGG: rba:RB9096 similar to UTP--glucose-1-phosphate uridylyltransferase.
  
     0.740
Acid_4013
KEGG: aba:Acid345_2179 hypothetical protein.
       0.727
Acid_3986
PFAM: PKD domain containing protein; KEGG: mac:MA2335 cell surface protein.
  
     0.698
Acid_4014
PFAM: oxidoreductase domain protein; KEGG: rba:RB3442 probable dehydrogenase.
       0.598
Acid_2668
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: mta:Moth_0425 uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.588
Acid_2616
KEGG: mes:Meso_2409 hypothetical protein.
  
     0.585
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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