STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4014PFAM: oxidoreductase domain protein; KEGG: rba:RB3442 probable dehydrogenase. (397 aa)    
Predicted Functional Partners:
Acid_1943
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sit:TM1040_3346 xylose isomerase-like TIM barrel.
  
 
  0.963
Acid_1484
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sit:TM1040_3346 xylose isomerase-like TIM barrel.
  
 
  0.959
Acid_1485
Inositol 2-dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cme:CMR244C probable dehydrogenase Pfam: 2-Hacid_dh_C Shikimate_DH ThiF Ldh_1_N GFO_IDH_MocA DapB_N Semialdhyde_dh TrkA_N NAD_binding_3 GFO_IDH_MocA_C.
  
  
 
0.927
Acid_2550
PFAM: oxidoreductase domain protein; KEGG: rba:RB1939 probable oxidoreductase.
  
  
 
0.923
Acid_7006
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB8565 similar to IolI protein.
   
 
  0.914
Acid_5909
PFAM: inositol monophosphatase; KEGG: aba:Acid345_2060 inositol-1(or 4)-monophosphatase.
    
 0.902
Acid_4072
Inositol oxygenase; PFAM: Protein of unknown function DUF706; KEGG: cne:CNF03950 myo-inositol oxygenase.
   
 
 0.901
Acid_5955
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sso:SSO3049 dehydrogenase, putative.
  
     0.773
Acid_1518
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB6199 dehydrogenase homolog.
  
     0.771
Acid_3185
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB5776 NADH-dependent dehydrogenase.
  
     0.770
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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