STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4019Transcriptional regulator, ArsR family; SMART: regulatory protein, ArsR; KEGG: ret:RHE_PE00138 putative transcriptional regulator protein, ArsR family. (121 aa)    
Predicted Functional Partners:
Acid_4020
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_PE00139 hypothetical protein.
    0.933
Acid_5224
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_PE00139 hypothetical protein.
    0.812
Acid_2291
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: gvi:gll1436 hypothetical protein.
 
    0.775
Acid_1877
PFAM: regulatory protein, ArsR; KEGG: btk:BT9727_4442 transcriptional regulator, ArsR family.
  
     0.771
Acid_2292
PFAM: regulatory protein, ArsR; transcriptional regulator TrmB; KEGG: bha:BH0694 transcriptional regulator (ArsR family).
  
     0.766
Acid_1896
PFAM: regulatory protein, ArsR; KEGG: pol:Bpro_3353 putative transcriptional regulator, ArsR family.
  
     0.751
Acid_4021
PFAM: alpha/beta hydrolase fold; KEGG: sme:SMc04165 putative oxidoreductase protein.
       0.678
Acid_1573
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mlr8183 hypothetical protein.
 
    0.579
Acid_1876
KEGG: mpa:MAP1640c hypothetical protein.
 
    0.451
Acid_4018
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_2675 TonB-dependent receptor.
       0.429
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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