Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_4036Spore coat assembly protein-like protein; KEGG: oih:OB2511 hypothetical protein. (645 aa)    
Predicted Functional Partners:
Acid_0929
PFAM: cytochrome c, class I; protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12024 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.731
Acid_6432
KEGG: rba:RB8177 hypothetical protein, putative transmembrane protein.
  
     0.708
Acid_0083
KEGG: ttj:TTHA1450 hypothetical protein.
  
     0.669
Acid_1591
Hypothetical protein; KEGG: aba:Acid345_0933 Cna B-type protein.
  
     0.665
Acid_0930
PFAM: protein of unknown function DUF1552; KEGG: rba:RB12022 hypothetical protein.
  
     0.658
Acid_1744
PFAM: Cna B domain protein; KEGG: aba:Acid345_0918 Cna B-type protein.
  
     0.656
Acid_5827
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB588 hypothetical protein-transmembrane prediction.
  
     0.626
Acid_6506
KEGG: ade:Adeh_1237 hypothetical protein.
  
     0.623
Acid_5826
PFAM: protein of unknown function DUF1552; KEGG: rba:RB598 hypothetical protein-signal peptide prediction.
  
     0.618
Acid_6433
TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: ade:Adeh_4265 conserved hypothetical protein, double-transmembrane region.
  
     0.618
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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