Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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[Homology]
Score
Acid_4076PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase. (322 aa)    
Predicted Functional Partners:
Acid_2215
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: gka:GK2112 hypothetical protein.
  
    0.749
Acid_7741
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB12038 unknown conserved protein BH0710.
  
    0.699
Acid_7509
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
     0.656
Acid_4077
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_4154 TonB-dependent receptor.
       0.618
Acid_3424
PFAM: carbohydrate kinase, FGGY; KEGG: bth:BT3763 rhamnulose kinase/L-fuculose kinase.
 
  
 0.615
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: cac:CAC2612 xylulose kinase.
 
 
 0.601
Acid_3245
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1949 sugar phosphate isomerase/epimerase.
  
     0.547
Acid_5045
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1949 sugar phosphate isomerase/epimerase.
  
     0.544
Acid_1518
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB6199 dehydrogenase homolog.
  
    0.508
Acid_3906
PFAM: oxidoreductase domain protein; KEGG: tma:TM0425 oxidoreductase, putative.
  
    0.508
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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