Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4142KEGG: rba:RB3550 probable endo-1,4-beta-xylanase B. (286 aa)    
Predicted Functional Partners:
Acid_5018
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dps:DP2209 probable NADH dehydrogenase (ubiquinone) I, chain F.
    
  0.948
Acid_4143
Hypothetical protein.
       0.762
Acid_7580
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.753
Acid_2072
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: nar:Saro_3112 lipolytic enzyme, G-D-S-L.
 
   
 0.660
Acid_3201
Sialate O-acetylesterase; PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: aba:Acid345_1697 sialate O-acetylesterase.
  
   
 0.615
Acid_2104
PFAM: protein of unknown function DUF303, acetylesterase putative; glycoside hydrolase family 2, sugar binding; KEGG: bth:BT4091 sialic acid-specific 9-O-acetylesterase.
  
   
 0.613
Acid_3990
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: nar:Saro_3112 lipolytic enzyme, G-D-S-L.
 
   
 0.545
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 0.534
Acid_7819
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bfs:BF3764 putative acylhydrolase.
 
   
 0.496
Acid_3476
MOSC domain containing protein; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; MOSC domain containing protein; Oxidoreductase FAD-binding domain protein; KEGG: aba:Acid345_2660 MOSC ferredoxin--oxidoreductase.
   
 0.478
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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