Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Acid_4152TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_3128 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (377 aa)    
Predicted Functional Partners:
Acid_4153
PFAM: outer membrane efflux protein; KEGG: gsu:GSU1482 outer membrane efflux protein.
 
  0.984
Acid_4151
PFAM: acriflavin resistance protein; KEGG: gme:Gmet_3127 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.983
Acid_2365
PFAM: acriflavin resistance protein; outer membrane efflux protein; KEGG: gsu:GSU2664 outer membrane efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.973
Acid_4150
KEGG: gsu:GSU0396 hypothetical protein.
 
     0.920
Acid_2624
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_3096 outer membrane efflux protein.
  
  0.900
Acid_5485
PFAM: acriflavin resistance protein; KEGG: aba:Acid345_0307 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.880
Acid_7835
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sat:SYN_02947 acriflavin resistance plasma membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.875
Acid_6333
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_3096 outer membrane efflux protein.
  
  0.867
Acid_5987
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_3096 outer membrane efflux protein.
  
  0.866
Acid_7910
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_3096 outer membrane efflux protein.
  
  0.856
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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