STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4159PFAM: type II secretion system protein; KEGG: pol:Bpro_2556 type II secretion system protein. (321 aa)    
Predicted Functional Partners:
Acid_4161
PFAM: SAF domain; KEGG: eba:ebA3714 pilus assembly transmembrane protein.
 
  
 0.981
Acid_4158
PFAM: type II secretion system protein; KEGG: rfr:Rfer_0801 type II secretion system protein.
 
  
 0.980
Acid_4160
PFAM: type II secretion system protein E; KEGG: nmu:Nmul_A2354 type II secretion system protein E.
 
  
 0.975
Acid_4162
PFAM: peptidase A24A, prepilin type IV; KEGG: rso:RSp1091 prepilin peptidase CpaA.
 
  
 0.963
Acid_1414
PFAM: type II secretion system protein; KEGG: sat:SYN_01499 flp pilus assembly protein.
 
  
 0.941
Acid_7745
PFAM: type II secretion system protein; KEGG: nmu:Nmul_A2352 type II secretion system protein.
 
  
 0.941
Acid_1411
Response regulator receiver protein; KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.924
Acid_4219
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.924
Acid_1409
PFAM: SAF domain; KEGG: eba:ebA3714 pilus assembly transmembrane protein.
 
  
 0.922
Acid_7753
PFAM: SAF domain; KEGG: plt:Plut_0800 pilus assembly protein CpaB.
 
  
 0.922
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.