Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acid_4239Hypothetical protein. (68 aa)    
Predicted Functional Partners:
Acid_4234
KEGG: aba:Acid345_3205 hypothetical protein.
       0.746
Acid_4235
KEGG: aba:Acid345_3204 hypothetical protein.
       0.746
Acid_4236
Heme exporter protein CcmA; KEGG: chy:CHY_1384 sodium ABC transporter, ATP-binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.746
Acid_4237
PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: aba:Acid345_2303 cytochrome c-type biogenesis protein CcmB.
       0.746
Acid_4238
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_2302 cytochrome c assembly protein.
       0.746
Acid_4232
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_3207 cytochrome c assembly protein.
       0.741
Acid_4233
Hypothetical protein; Possible subunit of a heme lyase.
       0.741
Acid_4231
Cytochrome c-type biogenesis protein, CcmE-like protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.715
Acid_4229
KEGG: ret:RHE_PE00271 hypothetical protein.
       0.435
Acid_4230
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: reu:Reut_A0385 FAD-dependent pyridine nucleotide-disulphide oxidoreductase:pyridine nucleotide-disulphide oxidoreductase dimerisation region.
       0.435
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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