STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4244PFAM: glycosyl transferase, group 1; KEGG: psb:Psyr_0936 glycosyl transferase, group 1. (366 aa)    
Predicted Functional Partners:
Acid_6634
PFAM: glycosyl transferase, group 1; KEGG: syf:Synpcc7942_2025 probable glycosyltransferase.
  
     0.741
Acid_6233
PFAM: glycosyl transferase, group 1; Methyltransferase type 11; KEGG: rba:RB9627 probable mannosyltransferase A (MtfA).
 
     0.685
Acid_4653
PFAM: glycosyl transferase, group 1; KEGG: dsy:DSY3337 hypothetical protein.
  
     0.674
Acid_7810
PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_2639 glycosyl transferase, group 1.
  
     0.656
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.589
Acid_2012
Hypothetical protein; KEGG: rba:RB9627 probable mannosyltransferase A (MtfA).
 
     0.564
Acid_4243
SMART: serine/threonine protein kinase; KEGG: aba:Acid345_4118 serine/threonine protein kinase.
       0.561
Acid_7732
DNA topoisomerase III; KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: ATP-dependent DNA helicase, RecQ family; DNA topoisomerase III; PFAM: helicase domain protein; HRDC domain protein; TOPRIM domain protein; DEAD/DEAH box helicase domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DEAD-like helicases-like.
    
 
 0.551
Acid_4245
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_1506 tetratricopeptide TPR_4.
       0.550
Acid_4246
Hypothetical protein.
       0.550
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.