Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_4271Hypothetical protein. (292 aa)    
Predicted Functional Partners:
Acid_4272
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_0369 ABC efflux pump, inner membrane subunit.
       0.505
Acid_4269
Hypothetical protein.
       0.453
Acid_4270
KEGG: aba:Acid345_2533 hypothetical protein.
       0.453
Acid_4273
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pha:PSHAa0736 hypothetical protein.
       0.449
Acid_4274
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: afm:Afu2g17000 hypothetical protein.
       0.401
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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