STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4272PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_0369 ABC efflux pump, inner membrane subunit. (832 aa)    
Predicted Functional Partners:
Acid_6482
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0366 secretion protein HlyD.
 
    0.803
Acid_6481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0367 ABC transporter, ATPase subunit.
 
   0.782
Acid_4169
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: aba:Acid345_0375 periplasmic sensor signal transduction histidine kinase.
 
     0.746
Acid_6478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0372 ABC transporter, ATPase subunit.
 
   0.736
Acid_4273
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pha:PSHAa0736 hypothetical protein.
       0.678
Acid_4274
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: afm:Afu2g17000 hypothetical protein.
   
   0.606
Acid_3595
PFAM: DinB family protein; KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.581
Acid_3829
KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.549
Acid_2173
KEGG: ade:Adeh_3441 hypothetical protein.
  
     0.516
Acid_0448
KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.510
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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