STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4280KEGG: aba:Acid345_1726 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Acid_4279
PFAM: beta-lactamase domain protein.
  
    0.777
Acid_3893
KEGG: rso:RS05437 hypothetical protein.
  
     0.598
Acid_3525
KEGG: aba:Acid345_4127 hypothetical protein.
  
     0.475
Acid_3436
KEGG: rpb:RPB_1874 hypothetical protein.
  
     0.468
Acid_4765
KEGG: aba:Acid345_4127 hypothetical protein.
  
     0.460
Acid_4907
PFAM: Abortive infection protein; KEGG: ccr:CC3458 hypothetical protein.
 
    0.453
Acid_4432
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2407 putative ABC-transporter membrane-spanning ATP-binding component.
  
     0.447
Acid_7598
KEGG: bja:bll2431 hypothetical protein.
  
     0.445
Acid_4157
KEGG: ccr:CC0122 hypothetical protein.
  
     0.429
Acid_5127
PFAM: phosphoesterase, PA-phosphatase related; KEGG: nmu:Nmul_A0927 phosphoesterase, PA-phosphatase related.
  
     0.418
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.