Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4282PFAM: protein of unknown function DUF1486; KEGG: ppr:PBPRB0239 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Acid_4283
PFAM: GCN5-related N-acetyltransferase; KEGG: nmu:Nmul_A0145 GCN5-related N-acetyltransferase.
       0.642
Acid_4284
PFAM: protein of unknown function DUF86; KEGG: rpb:RPB_0375 protein of unknown function DUF86.
       0.642
Acid_3142
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: jan:Jann_3483 NADP oxidoreductase, coenzyme F420-dependent.
 
     0.509
Acid_4285
PFAM: DNA polymerase, beta domain protein region; KEGG: rpa:RPA0276 PAP/25A core domain:DNA polymerase, beta-like region.
       0.490
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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