Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4286KEGG: ava:Ava_3508 predicted signal transduction protein containing NACHT domain. (1134 aa)    
Predicted Functional Partners:
cobB
PFAM: Silent information regulator protein Sir2; KEGG: aae:aq_2170 hypothetical protein; Belongs to the sirtuin family. Class III subfamily.
   
   0.879
Acid_6274
KEGG: sco:SCO6735 hypothetical protein.
 
   
 0.581
Acid_3161
PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein.
 
     0.515
Acid_7039
KEGG: rru:Rru_A1416 hypothetical protein.
  
     0.490
Acid_0951
PFAM: Tetratricopeptide TPR_4; KEGG: noc:Noc_0166 TPR repeat protein.
  
     0.480
Acid_4285
PFAM: DNA polymerase, beta domain protein region; KEGG: rpa:RPA0276 PAP/25A core domain:DNA polymerase, beta-like region.
       0.470
Acid_6371
KEGG: syn:sll0624 hypothetical protein.
  
     0.462
Acid_1609
KEGG: bte:BTH_I2730 plasmid related protein.
  
     0.442
Acid_7627
KEGG: bte:BTH_I2730 plasmid related protein.
  
     0.435
Acid_5038
PFAM: WD-40 repeat protein; KEGG: rba:RB5920 WD40 repeat protein.
 
  
  0.428
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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