Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4313PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: bld:BLi01797 protein phosphatase; RBL04052. (248 aa)    
Predicted Functional Partners:
Acid_4314
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rba:RB1532 probable serine/threonine-protein kinase PknA.
 
   0.954
Acid_7020
PFAM: protein kinase; WD40 domain protein beta Propeller; SMART: tyrosine protein kinase; WD-40 repeat protein; serine/threonine protein kinase; KEGG: aba:Acid345_4390 serine/threonine protein kinase.
 
 0.942
Acid_2937
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase, central region; Transketolase domain protein; KEGG: sru:SRU_0576 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit.
  
 0.941
Acid_3687
PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: aba:Acid345_1786 dehydrogenase, E1 component.
  
 0.941
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.892
Acid_4310
PFAM: Forkhead-associated protein; cyclic nucleotide-binding; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rba:RB12994 putative oxidoreductase, Fe-S subunit.
  
 0.891
Acid_2466
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: aba:Acid345_1052 serine/threonine protein kinase with TPR repeats.
 
 0.855
Acid_3964
PFAM: protein of unknown function RIO1; protein kinase; TPR repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: aba:Acid345_3088 serine/threonine protein kinase with TPR repeats.
 
 0.853
Acid_3190
NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.852
Acid_2471
PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aba:Acid345_3088 serine/threonine protein kinase with TPR repeats.
 
 0.850
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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