Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Acid_4325 | Acid_4326 | Hypothetical protein; KEGG: aba:Acid345_3841 TonB-dependent receptor. | KEGG: ava:Ava_3837 hypothetical protein. | 0.406 |
Acid_4326 | Acid_4325 | KEGG: ava:Ava_3837 hypothetical protein. | Hypothetical protein; KEGG: aba:Acid345_3841 TonB-dependent receptor. | 0.406 |
Acid_4326 | Acid_4327 | KEGG: ava:Ava_3837 hypothetical protein. | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A1198 lysine exporter protein (LysE/YggA). | 0.723 |
Acid_4326 | Acid_4328 | KEGG: ava:Ava_3837 hypothetical protein. | TIGRFAM: conserved repeat domain; KEGG: cyb:CYB_1569 conserved repeat domain protein. | 0.468 |
Acid_4327 | Acid_4326 | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A1198 lysine exporter protein (LysE/YggA). | KEGG: ava:Ava_3837 hypothetical protein. | 0.723 |
Acid_4327 | Acid_4328 | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A1198 lysine exporter protein (LysE/YggA). | TIGRFAM: conserved repeat domain; KEGG: cyb:CYB_1569 conserved repeat domain protein. | 0.497 |
Acid_4328 | Acid_4326 | TIGRFAM: conserved repeat domain; KEGG: cyb:CYB_1569 conserved repeat domain protein. | KEGG: ava:Ava_3837 hypothetical protein. | 0.468 |
Acid_4328 | Acid_4327 | TIGRFAM: conserved repeat domain; KEGG: cyb:CYB_1569 conserved repeat domain protein. | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A1198 lysine exporter protein (LysE/YggA). | 0.497 |