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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4331KEGG: sde:Sde_2786 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Acid_4330
KEGG: eba:ebA7092 hypothetical protein, predicted transcription regulator.
 
 
 0.997
Acid_4332
PFAM: Redoxin domain protein.
       0.625
Acid_5482
PFAM: protein of unknown function DUF497; KEGG: ana:asr0755 hypothetical protein.
  
   
 0.576
Acid_3908
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
   
 0.547
Acid_3197
PFAM: YcfA family protein; KEGG: rba:RB3259 hypothetical protein.
  
   
 0.541
Acid_7918
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family.
 
   
 0.511
Acid_3909
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ana:asl0171 hypothetical protein.
  
   
 0.484
Acid_1716
KEGG: rpb:RPB_2524 hypothetical protein.
  
     0.482
Acid_7034
KEGG: atc:AGR_C_3184 hypothetical protein.
 
   
 0.469
Acid_0970
Transcriptional regulator, Fis family; KEGG: gme:Gmet_2961 hypothetical protein.
 
   
 0.454
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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