Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acid_4341Hypothetical protein. (356 aa)    
Predicted Functional Partners:
Acid_4339
Hypothetical protein.
  
 
 0.688
Acid_0095
KEGG: rpa:RPA3875 hypothetical protein.
   
 
 0.468
Acid_3427
PFAM: glycoside hydrolase, family 5; KEGG: sde:Sde_1572 3-hydroxyacyl-CoA dehydrogenase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.468
Acid_4954
Hypothetical protein.
   
 
 0.468
Acid_6094
Hypothetical protein.
   
 
 0.468
Acid_7217
Hypothetical protein.
   
 
 0.468
Acid_7837
Hypothetical protein.
   
 
 0.468
Acid_4340
Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mlo:mlr8128 hypothetical protein.
       0.439
Acid_4342
PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1; KEGG: xac:XAC3110 glycosyltransferase.
       0.433
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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