Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4344KEGG: rha:RHA1_ro09131 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Acid_4343
PFAM: protein of unknown function DUF1211; KEGG: dar:Daro_3436 protein of unknown function DUF1211.
       0.773
Acid_4345
Serine phosphatase; PFAM: GAF domain protein; protein of unknown function DUF214; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: gvi:glr1418 putative ABC transport system permease protein.
       0.693
Acid_4346
PFAM: Amidase; KEGG: reu:Reut_B5142 amidase.
       0.505
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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