Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_4348Hypothetical protein. (276 aa)    
Predicted Functional Partners:
Acid_4349
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: gka:GK1907 arabinose metabolism transcriptional repressor.
       0.615
Acid_4350
KEGG: aba:Acid345_1510 hypothetical protein.
       0.425
Acid_4351
PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1180 major facilitator superfamily MFS_1.
       0.413
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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