Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4366TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein. (92 aa)    
Predicted Functional Partners:
Acid_4367
Hypothetical protein.
    
 0.943
Acid_3909
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ana:asl0171 hypothetical protein.
     
 0.734
Acid_4330
KEGG: eba:ebA7092 hypothetical protein, predicted transcription regulator.
     
 0.734
Acid_4331
KEGG: sde:Sde_2786 hypothetical protein.
     
 0.734
Acid_2061
PFAM: HipA domain protein; KEGG: neu:NE1310 possible HipA protein.
     
 0.689
Acid_7034
KEGG: atc:AGR_C_3184 hypothetical protein.
    
 0.663
Acid_7918
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family.
    
 0.663
Acid_2717
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: aba:Acid345_4372 hypothetical protein.
     
 0.644
Acid_2841
PFAM: helix-turn-helix domain protein; LysR, substrate-binding; KEGG: ava:Ava_4042 transcriptional regulator of molybdate metabolism, XRE family.
     
 0.644
Acid_4365
Hypothetical protein; KEGG: aba:Acid345_3008 von Willebrand factor, type A.
       0.639
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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