Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4380ABC-2 type transporter; PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: aba:Acid345_2221 ABC multidrug efflux pump, inner membrane subunit. (246 aa)    
Predicted Functional Partners:
Acid_4381
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_2220 daunorubicin resistance ABC transporter ATPase subunit.
 
 0.970
Acid_4378
PFAM: protein of unknown function DUF420; KEGG: bsu:BG13749 similar to hypothetical proteins.
 
     0.822
Acid_0602
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM3135 ABC transporter, ATP-binding protein.
 
 
 0.798
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.790
Acid_4383
PFAM: cytochrome oxidase assembly; KEGG: sru:SRU_2368 putative cytochrome aa3 oxidase assembly protein, putative CtaA.
       0.778
Acid_4379
PFAM: electron transport protein SCO1/SenC; KEGG: sth:STH2094 hypothetical protein.
       0.776
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
     
 0.731
Acid_2046
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ret:RHE_PF00265 probable two-component sensor histidine kinase/response regulator hybrid protein.
    
 0.727
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
  
 
 0.712
Acid_4384
KEGG: aba:Acid345_0436 hypothetical protein.
 
     0.694
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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