STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4391PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: xcb:XC_2680 hypothetical protein. (709 aa)    
Predicted Functional Partners:
Acid_2812
PFAM: nitrogen-fixing NifU domain protein; KEGG: chy:CHY_2198 putative FeS assembly protein.
   
    0.761
Acid_7703
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: noc:Noc_2486 SUF system FeS assembly protein.
   
    0.761
Acid_4392
PFAM: beta-lactamase domain protein; KEGG: bte:BTH_I1394 metallo-beta-lactamase family protein.
       0.648
Acid_3866
PFAM: Asp/Glu racemase; KEGG: rso:RSc0212 putative aspartate racemase protein.
   
    0.489
Acid_0578
Kumamolisin. Serine peptidase. MEROPS family S53; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: bxe:Bxe_B1994 kumamolisin.
  
     0.435
Acid_4389
KEGG: ana:all5120 unknown protein.
  
    0.412
Acid_4390
PFAM: peptidase M19, renal dipeptidase; KEGG: aba:Acid345_2579 membrane dipeptidase.
       0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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