Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4441PFAM: glycoside hydrolase, family 43; KEGG: sco:SCO2427 secreted arabinase. (337 aa)    
Predicted Functional Partners:
Acid_7480
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4173 putative rhamnogalacturonan acetylesterase.
   
 0.857
Acid_2993
PFAM: glycoside hydrolase, family 43; KEGG: bfs:BF0575 putative glycosyl hydrolase/xylanase.
  
     0.762
Acid_2681
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; KEGG: sde:Sde_2633 endo-1,4-beta-xylanase.
 
   
 0.744
Acid_2666
Alpha-glucuronidase; PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: aba:Acid345_0963 alpha-glucosiduronase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.740
Acid_4394
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; Carbohydrate-binding, CenC domain protein domain protein; KEGG: tma:TM0061 endo-1,4-beta-xylanase A.
 
   
 0.739
Acid_1242
PFAM: protein of unknown function DUF1680; KEGG: sma:SAV1144 secreted protein.
 
   
 0.738
Acid_2992
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: aor:AO090012000298 alpha-L-arabinofuranosidase Pfam: CBM_4_9 Alpha-L-AF_C.
  
 0.738
Acid_3748
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bth:BT0348 alpha-L-arabinofuranosidase.
 
  
 0.735
Acid_4010
Alpha-L-arabinofuranosidase-like protein; KEGG: tma:TM0281 alpha-L-arabinofuranosidase.
 
  
 0.734
Acid_6783
PFAM: protein of unknown function DUF1680; KEGG: sma:SAV1144 secreted protein.
 
   
 0.732
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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