Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4451PFAM: oxidoreductase domain protein; KEGG: rba:RB6860 probable NADH-dependent dehydrogenase. (396 aa)    
Predicted Functional Partners:
Acid_3185
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB5776 NADH-dependent dehydrogenase.
  
     0.773
Acid_1518
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB6199 dehydrogenase homolog.
  
     0.756
Acid_2241
PFAM: oxidoreductase domain protein; KEGG: aba:Acid345_2847 oxidoreductase.
  
     0.752
Acid_6205
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; KEGG: aba:Acid345_0232 oxidoreductase.
  
     0.677
Acid_3906
PFAM: oxidoreductase domain protein; KEGG: tma:TM0425 oxidoreductase, putative.
  
     0.652
Acid_5692
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.644
Acid_4644
PFAM: oxidoreductase domain protein; KEGG: bms:BRA0109 oxidoreductase, Gfo/Idh/MocA family.
  
     0.641
Acid_2627
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.621
Acid_4454
PFAM: oxidoreductase domain protein; KEGG: rba:RB9026 probable NADH-dependent dyhydrogenase.
 
    
0.614
Acid_4452
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12897 hypothetical protein-signal peptide prediction.
  
    0.591
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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