STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4466PFAM: beta-lactamase; KEGG: sth:STH915 beta-lactamase. (303 aa)    
Predicted Functional Partners:
Acid_2285
PFAM: beta-lactamase; KEGG: aba:Acid345_1607 beta-lactamase.
  
  
 
0.920
Acid_4936
PFAM: peptidase S45, penicillin amidase; KEGG: aba:Acid345_3370 penicillin amidase.
     
  0.900
Acid_5979
PFAM: peptidase S45, penicillin amidase; KEGG: oih:OB3304 penicillin acylase.
     
  0.900
Acid_4467
Cellulase; PFAM: peptidase M42 family protein; KEGG: gka:GK2713 hypothetical protein.
       0.561
Acid_3545
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate etc).
 
     0.557
Acid_3623
Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate etc).
 
     0.528
Acid_0754
Dihydroorotase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: aba:Acid345_3836 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
     0.523
Acid_0057
Dihydroorotase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: aba:Acid345_3836 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
     0.514
Acid_4612
Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: aba:Acid345_3040 D-aminoacylase-like.
 
     0.451
Acid_4465
PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: gsu:GSU2599 ISGsu4, transposase.
       0.443
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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