Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4473PFAM: Radical SAM domain protein; KEGG: hal:VNG1185G PqqE. (334 aa)    
Predicted Functional Partners:
Acid_2931
KEGG: aba:Acid345_0817 Fe-S protein, radical SAM family.
  
     0.774
Acid_5675
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_2766 Fe-S protein, radical SAM family.
  
     0.653
Acid_4472
Hypothetical protein.
       0.529
Acid_3334
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mma:MM0214 hypothetical protein.
  
    0.471
Acid_7814
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: sme:SMb20179 hypothetical protein.
  
    0.451
Acid_0669
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mba:Mbar_A3461 hypothetical protein.
  
    0.425
Acid_3181
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sat:SYN_02272 uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase.
 
  
 0.423
Acid_5010
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: bja:blr6207 probable quinoprotein ethanol dehydrogenase precursor.
 
  
 0.406
Acid_5413
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: bja:blr6207 probable quinoprotein ethanol dehydrogenase precursor.
 
  
 0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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