STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4474TIGRFAM: TonB family protein; KEGG: aba:Acid345_0148 TonB-like protein. (253 aa)    
Predicted Functional Partners:
Acid_4475
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_1545 TonB-dependent receptor.
 
   0.772
Acid_2685
KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
   0.755
Acid_4018
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_2675 TonB-dependent receptor.
  
   0.753
Acid_2975
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
   0.750
Acid_0196
KEGG: aba:Acid345_2388 Cna B-type protein.
  
   0.745
Acid_7647
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_3909 TonB-dependent receptor.
  
   0.740
Acid_0105
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0918 Cna B-type protein.
  
   0.737
Acid_4325
Hypothetical protein; KEGG: aba:Acid345_3841 TonB-dependent receptor.
  
   0.737
Acid_1306
Hypothetical protein; KEGG: aba:Acid345_1501 TonB-dependent receptor.
  
   0.736
Acid_1620
Hypothetical protein; KEGG: aba:Acid345_0417 TonB-dependent receptor.
  
   0.736
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.