Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_4487PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xoo:XOO2337 ABC transporter ATP-binding protein. (610 aa)    
Predicted Functional Partners:
rnj
Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.732
Acid_5821
PFAM: permease YjgP/YjgQ family protein; KEGG: aba:Acid345_1515 transporter, YjgP/YjgQ family.
  
 
 0.657
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
    
 0.643
Acid_6743
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_1661 ABC transporter, ATPase subunit.
    
 0.629
Acid_6716
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV3608 putative ABC transporter ATP-binding protein.
     
  0.618
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
   
 0.553
Acid_2000
KEGG: ade:Adeh_2155 hypothetical protein.
  
     0.538
Acid_1999
KEGG: ade:Adeh_2156 hypothetical protein.
 
     0.522
rpsB
PFAM: ribosomal protein S2; KEGG: aba:Acid345_0563 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
  0.520
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 0.491
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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