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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4530KEGG: sde:Sde_1284 hypothetical protein. (393 aa)    
Predicted Functional Partners:
Acid_5873
PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: sde:Sde_1285 beta-galactosidase/beta-glucuronidase-like; Belongs to the glycosyl hydrolase 2 family.
     0.821
Acid_4529
PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
  
    0.724
Acid_5934
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: nar:Saro_1049 RhaT L-rhamnose-proton symport 2.
  
     0.696
Acid_4531
PFAM: protein of unknown function DUF1080; KEGG: rba:RB569 conserved hypothetical protein, putative secreted protein.
       0.620
Acid_2790
KEGG: cvi:CV0707 hypothetical protein.
 
     0.598
Acid_4041
PFAM: Heparinase II/III family protein; KEGG: yps:YPTB0499 hypothetical protein.
  
     0.556
Acid_7164
PFAM: Heparinase II/III family protein; KEGG: hypothetical protein.
  
     0.525
Acid_2314
Glutaminase; KEGG: bth:BT3526 glutaminase.
 
     0.521
Acid_1577
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB2971 hypothetical protein.
  
     0.517
Acid_1463
Hypothetical protein.
  
     0.515
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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