STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4571PFAM: band 7 protein; Flotillin domain protein; KEGG: aba:Acid345_1402 flotillin. (477 aa)    
Predicted Functional Partners:
Acid_4572
KEGG: aba:Acid345_1400 hypothetical protein.
  
  
 0.965
Acid_4570
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: aba:Acid345_1403 phage shock protein A, PspA.
 
  
 0.909
Acid_4826
KEGG: pcu:pc1032 hypothetical protein.
     
 0.796
Acid_4573
Putative transcriptional regulator, XRE family; KEGG: aba:Acid345_1399 hypothetical protein.
       0.750
Acid_1978
Transcriptional regulator, Fis family; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sru:SRU_0006 retinol dehydrogenase 11; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
      0.747
Acid_2384
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: syw:SYNW1879 similar to chloroplast membrane-associated 30 kD protein.
 
  
 0.705
Acid_1498
Nodulation efficiency protein NfeD; PFAM: protein of unknown function DUF107; KEGG: aba:Acid345_2529 protein of unknown function DUF107.
  
    0.619
Acid_4574
PFAM: regulatory protein, ArsR; KEGG: aba:Acid345_1949 transcriptional regulator, ArsR family.
       0.547
Acid_1890
PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0045 ABC transporter related.
     
 0.541
Acid_1499
PFAM: band 7 protein; KEGG: aba:Acid345_2530 membrane protease.
  
  
 0.529
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.