Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Acid_4571PFAM: band 7 protein; Flotillin domain protein; KEGG: aba:Acid345_1402 flotillin. (477 aa)    
Predicted Functional Partners:
Acid_4572
KEGG: aba:Acid345_1400 hypothetical protein.
  
  
 0.961
Acid_4570
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: aba:Acid345_1403 phage shock protein A, PspA.
 
  
 0.904
Acid_4573
Putative transcriptional regulator, XRE family; KEGG: aba:Acid345_1399 hypothetical protein.
       0.750
Acid_1978
Transcriptional regulator, Fis family; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sru:SRU_0006 retinol dehydrogenase 11; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
      0.747
Acid_3182
PFAM: phosphoribulokinase/uridine kinase; KEGG: aba:Acid345_3054 uridine kinase; Belongs to the uridine kinase family.
     
  0.734
Acid_4222
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
  0.734
Acid_0757
PFAM: Mov34/MPN/PAD-1 family protein; KEGG: aae:aq_1691 hypothetical protein.
    
  0.692
Acid_4446
Metal-dependent protease of the PAD1/JAB1 superfamily-like protein; KEGG: sth:STH1150 hypothetical protein.
    
  0.692
Acid_7667
PFAM: Mov34/MPN/PAD-1 family protein; KEGG: bbr:BB1438 DNA polymerase III subunit Tau.
    
  0.692
Acid_2384
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: syw:SYNW1879 similar to chloroplast membrane-associated 30 kD protein.
 
  
 0.690
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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