Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
Acid_4589PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_2886 ABC transporter, ATPase subunit. (261 aa)    
Predicted Functional Partners:
Acid_0582
PFAM: protein of unknown function DUF140; KEGG: aba:Acid345_2890 protein of unknown function DUF140; Belongs to the MlaE permease family.
 0.998
Acid_0580
PFAM: Mammalian cell entry related domain protein; KEGG: aba:Acid345_4517 mammalian cell entry related.
 
 0.947
Acid_1270
PFAM: Mammalian cell entry related domain protein; KEGG: aba:Acid345_4517 mammalian cell entry related.
 
 0.930
Acid_6239
PFAM: Mammalian cell entry related domain protein; KEGG: aba:Acid345_4517 mammalian cell entry related.
  
 0.920
Acid_4588
Molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
       0.814
Acid_1126
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1561 ABC transporter, ATP-binding protein.
 
     0.764
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
  
     0.700
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.659
cysS
KEGG: aba:Acid345_3992 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.610
Acid_0827
PFAM: ABC-3 protein; KEGG: aae:aq_2165 putative manganese transport system permease protein.
     
  0.609
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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