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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4591KEGG: aba:Acid345_2164 hypothetical protein. (164 aa)    
Predicted Functional Partners:
Acid_1844
KEGG: bat:BAS2535 hypothetical protein.
  
     0.737
Acid_2155
KEGG: bha:BH0186 hypothetical protein.
  
     0.689
Acid_0211
KEGG: pha:PSHAa1861 hypothetical protein.
  
     0.620
Acid_4592
PFAM: tRNA--hydroxylase; KEGG: syf:Synpcc7942_0914 tRNA-(MS(2)IO(6)A)-hydroxylase-like.
       0.613
Acid_5054
DinB; KEGG: aba:Acid345_0081 DinB.
  
     0.552
Acid_2788
PFAM: protein of unknown function DUF1094; KEGG: aba:Acid345_1880 protein of unknown function DUF1094; Belongs to the UPF0403 family.
  
     0.513
Acid_2093
KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.470
Acid_3247
KEGG: bcl:ABC1198 hypothetical protein.
  
     0.464
Acid_0993
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_2828 ABC transporter, ATPase subunit.
  
     0.461
Acid_6085
KEGG: aba:Acid345_0445 hypothetical protein.
  
     0.452
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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