Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4604Hypothetical protein; KEGG: gvi:gll4200 similar to cell surface glycoprotein (s-layer protein) related protein. (948 aa)    
Predicted Functional Partners:
Acid_4603
KEGG: aba:Acid345_1594 hypothetical protein.
       0.773
Acid_4605
PFAM: Cna B domain protein; KEGG: aba:Acid345_2674 hypothetical protein.
   
   0.584
Acid_4602
Hypothetical protein.
       0.552
Acid_5535
KEGG: aba:Acid345_4447 hypothetical protein.
  
     0.541
Acid_5139
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_0373 outer membrane efflux protein.
  
    0.436
Acid_0030
PFAM: UvrD/REP helicase; KEGG: sru:SRU_1806 probable ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
    0.409
Acid_4600
KEGG: aba:Acid345_2624 hypothetical protein.
       0.408
Acid_4601
PFAM: PfkB domain protein; KEGG: ade:Adeh_1632 carbohydrate kinase, PfkB.
       0.408
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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