Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_4606KEGG: ath:At5g57700_1 expressed protein. (321 aa)    
Predicted Functional Partners:
Acid_1398
PFAM: coagulation factor 5/8 type domain protein; KEGG: nar:Saro_2423 twin-arginine translocation pathway signal.
     0.909
Acid_5559
alpha-L-rhamnosidase; PFAM: glycoside hydrolase family 2, sugar binding; alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein; KEGG: bfr:BF0596 putative alpha-rhamnosidase.
      0.900
Acid_7102
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.694
Acid_1801
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.608
Acid_3533
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.604
Acid_6537
KEGG: rba:RB11994 conserved hypothetical protein, putative secreted protein.
  
     0.566
Acid_7764
PFAM: oxidoreductase domain protein; KEGG: rba:RB6858 hypothetical oxidoreductase.
  
     0.564
Acid_2874
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.548
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.547
Acid_4607
Beta-galactosidase; PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: aba:Acid345_4484 glycoside hydrolase family 2, TIM barrel.
       0.544
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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