STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4612Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: aba:Acid345_3040 D-aminoacylase-like. (465 aa)    
Predicted Functional Partners:
Acid_4613
Hypothetical protein.
       0.773
Acid_4610
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: aba:Acid345_1425 transcriptional regulator, AraC family.
  
    0.575
Acid_4611
Hypothetical protein.
       0.570
Acid_4609
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mca:MCA2808 hypothetical protein.
       0.460
Acid_4466
PFAM: beta-lactamase; KEGG: sth:STH915 beta-lactamase.
 
     0.451
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.