Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4641PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1505 ABC transporter, ATP-binding protein. (437 aa)    
Predicted Functional Partners:
Acid_4640
PFAM: ABC-2 type transporter; KEGG: syn:slr0977 putative O-antigen export system permease protein, ABC-2 type transporter permease protein.
 
 0.996
Acid_0555
PFAM: ABC-2 type transporter; KEGG: cac:CAC2329 polysaccharide ABC transporter, permease component.
 
 0.986
Acid_3568
PFAM: ABC-2 type transporter; KEGG: dvu:DVUA0077 ABC transporter, permease protein.
 
 0.986
Acid_6234
PFAM: ABC-2 type transporter; KEGG: pfo:Pfl_4049 ABC-2.
 
 0.986
Acid_6944
PFAM: ABC-2 type transporter; KEGG: pfo:Pfl_4064 ABC-2.
 
 0.986
Acid_4638
PFAM: polysaccharide export protein; KEGG: aba:Acid345_3311 polysaccharide export protein.
  
  
 0.780
Acid_6618
PFAM: lipopolysaccharide biosynthesis; KEGG: mca:MCA0149 chain length determinant protein.
  
  
 0.779
Acid_1392
SMART: AAA ATPase; KEGG: syf:Synpcc7942_1244 ATPase.
  
     0.768
Acid_4645
PFAM: glycosyl transferase, family 2; KEGG: ana:all0914 probable glycosyl transferase.
 
  
 0.664
Acid_4643
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mka:MK0156 predicted pyridoxal-phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.637
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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