Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4643PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mka:MK0156 predicted pyridoxal-phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (459 aa)    
Predicted Functional Partners:
Acid_5707
PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; KEGG: lipopolysaccharide biosynthesis protein.
 
  
 0.922
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.857
Acid_4861
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
 
  
 0.819
Acid_2339
PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; KEGG: lipopolysaccharide biosynthesis protein.
 
  
 0.804
Acid_4642
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC2803 ubiquinone/menaquinone biosynthesis methyltransferase UBIE.
     
 0.764
Acid_4645
PFAM: glycosyl transferase, family 2; KEGG: ana:all0914 probable glycosyl transferase.
  
  
 0.725
Acid_4644
PFAM: oxidoreductase domain protein; KEGG: bms:BRA0109 oxidoreductase, Gfo/Idh/MocA family.
  
    0.708
Acid_4646
Acetyltransferase (isoleucine patch superfamily)-like protein; KEGG: gka:GK1921 maltose transacetylase (maltose O-acetyltransferase).
  
  
 0.679
Acid_4641
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1505 ABC transporter, ATP-binding protein.
     
 0.637
Acid_4640
PFAM: ABC-2 type transporter; KEGG: syn:slr0977 putative O-antigen export system permease protein, ABC-2 type transporter permease protein.
     
 0.619
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.