STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4654PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A3856 putative transferase. (333 aa)    
Predicted Functional Partners:
Acid_4655
PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1293 glycosyl transferase, group 1.
 
     0.907
Acid_4656
PFAM: transferase hexapeptide repeat containing protein; KEGG: rsp:RSP_7375 acetyltransferase (isoleucine patch superfamily).
  
 0.895
Acid_4651
PFAM: glycosyl transferase, group 1; KEGG: ana:alr5237 probable glycosyl transferase.
 
     0.756
Acid_4653
PFAM: glycosyl transferase, group 1; KEGG: dsy:DSY3337 hypothetical protein.
 
     0.659
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.556
Acid_7732
DNA topoisomerase III; KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: ATP-dependent DNA helicase, RecQ family; DNA topoisomerase III; PFAM: helicase domain protein; HRDC domain protein; TOPRIM domain protein; DEAD/DEAH box helicase domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DEAD-like helicases-like.
    
 
 0.551
Acid_4630
KEGG: mca:MCA1168 colanic acid biosynthesis glycosyl transferase, putative.
 
     0.532
Acid_4639
PFAM: lipopolysaccharide biosynthesis; KEGG: aba:Acid345_3310 protein-tyrosine kinase.
 
  
 0.514
Acid_5707
PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; KEGG: lipopolysaccharide biosynthesis protein.
  
  
 0.506
Acid_4647
PFAM: glycosyl transferase, family 2; KEGG: mlo:mlr1946 probable glycosyl transferase.
 
    0.491
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.