Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Acid_4802KEGG: ava:Ava_1934 hypothetical protein. (216 aa)    
Predicted Functional Partners:
Acid_4803
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: ana:alr4738 transcriptional regulator.
 
    0.829
Acid_7165
PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll2986 hypothetical protein.
      0.636
Acid_2601
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: aba:Acid345_2172 transcriptional regulator, GntR family.
 
    0.606
Acid_4804
L-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lmo:lmo0305 hypothetical protein.
       0.565
Acid_4095
KEGG: cps:CPS_4697 hypothetical protein.
  
     0.514
Acid_4094
KEGG: cps:CPS_4697 hypothetical protein.
  
     0.505
Acid_6750
PFAM: ThiJ/PfpI domain protein; KEGG: bcz:BCZK2399 ThiJ/PfpI family protein.
 
     0.478
Acid_4192
Transcriptional regulator, AraC family; PFAM: AraC protein, arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA1235 probable transcriptional regulator.
 
    0.462
Acid_1894
PFAM: Erythromycin esterase; KEGG: hal:VNG1811G succinoglycan biosynthesis.
  
  
 0.441
Acid_4093
anti-ECFsigma factor, ChrR.
  
     0.418
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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