STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4812PFAM: condensation domain protein; KEGG: pae:PA3329 hypothetical protein. (461 aa)    
Predicted Functional Partners:
Acid_4714
PFAM: Thioesterase; glycosyl transferase, group 1; KEGG: ava:Ava_4730 thioesterase.
 
  
 0.937
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
 
  
 0.736
Acid_4813
FkbH like protein; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: sde:Sde_0172 enzyme involved in methoxymalonyl-ACP biosynthesis-like.
 
     0.627
Acid_0140
PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: hch:HCH_00869 chitinase.
  
   
 0.626
Acid_3077
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0465 beta-ketoacyl synthase.
  
  
 0.595
Acid_1973
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; 4'-phosphopantetheinyl transferase; KEGG: gvi:gll4225 probable glycolipid synthase.
 
  
 0.591
Acid_4814
KEGG: sru:SRU_2443 hypothetical protein.
       0.525
Acid_6281
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: gme:Gmet_1475 YD repeat protein.
  
    0.477
Acid_1351
KEGG: aba:Acid345_3971 putative secreted protein.
  
     0.457
Acid_4716
FkbH like protein; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; PFAM: phosphopantetheine-binding; KEGG: sma:SAV1551 modular polyketide synthase.
 
     0.456
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.