STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4858PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02355 acetyltransferase. (226 aa)    
Predicted Functional Partners:
Acid_4860
DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mja:MJ1066 spore coat polysaccharide biosynthesis protein C (SpsC); Belongs to the DegT/DnrJ/EryC1 family.
   
 
 0.790
Acid_4855
PFAM: lipopolysaccharide biosynthesis; KEGG: noc:Noc_1497 protein-tyrosine kinase.
       0.778
Acid_4856
PFAM: polysaccharide biosynthesis protein; KEGG: aba:Acid345_0837 polysaccharide biosynthesis protein.
       0.777
Acid_4859
PFAM: sugar transferase; KEGG: bpe:BP0087 probable sugar transferase.
       0.775
Acid_4857
PFAM: glycosyl transferase, group 1; KEGG: chy:CHY_1058 glycosyltransferase, group 1 family.
       0.773
Acid_4861
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
       0.752
Acid_4863
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ret:RHE_CH01365 putative aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
   
 
 0.653
Acid_4864
Hypothetical protein; KEGG: csa:Csal_1720 polysaccharide deacetylase.
     
 0.633
Acid_4862
KEGG: sat:SYN_01143 hypothetical cytosolic protein.
       0.625
Acid_4865
KEGG: mja:MJ0255 (2R)-phospho-3-sulfolactate synthase.
       0.625
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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