STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4879PFAM: Transglycosylase-associated protein; KEGG: bms:BR0433 transglycosylase-associated protein, putative. (83 aa)    
Predicted Functional Partners:
Acid_4878
KEGG: mca:MCA0469 hypothetical protein.
       0.605
Acid_3752
KEGG: bxe:Bxe_B0024 hypothetical protein.
   
    0.531
Acid_7803
KEGG: mba:Mbar_A1694 hypothetical protein.
   
    0.531
Acid_4880
Hypothetical protein.
       0.449
Acid_4881
PFAM: lipopolysaccharide biosynthesis; KEGG: noc:Noc_1497 protein-tyrosine kinase.
       0.449
Acid_4882
PFAM: O-antigen polymerase; KEGG: mlo:mll8434 hypothetical protein.
       0.449
Acid_4877
KEGG: aba:Acid345_4077 hypothetical protein.
       0.443
Acid_2962
PFAM: CsbD family protein; KEGG: nmu:Nmul_A1196 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.434
Acid_3720
PFAM: CsbD family protein; KEGG: nmu:Nmul_A1196 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.434
Acid_4883
Phosphosulfolactate phosphohydrolase and related enzyme-like protein; KEGG: sth:STH1711 putative 2-phosphosulfolactate phosphatase; Belongs to the ComB family.
       0.422
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.