STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4882PFAM: O-antigen polymerase; KEGG: mlo:mll8434 hypothetical protein. (409 aa)    
Predicted Functional Partners:
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.878
Acid_4881
PFAM: lipopolysaccharide biosynthesis; KEGG: noc:Noc_1497 protein-tyrosine kinase.
  
  
 0.816
Acid_4880
Hypothetical protein.
       0.773
Acid_4883
Phosphosulfolactate phosphohydrolase and related enzyme-like protein; KEGG: sth:STH1711 putative 2-phosphosulfolactate phosphatase; Belongs to the ComB family.
       0.718
Acid_4884
KEGG: sat:SYN_01143 hypothetical cytosolic protein.
       0.718
Acid_4861
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
  
  
 0.463
Acid_4879
PFAM: Transglycosylase-associated protein; KEGG: bms:BR0433 transglycosylase-associated protein, putative.
       0.449
Acid_3867
KEGG: mma:MM0186 hypothetical protein.
  
     0.429
Acid_1377
PFAM: polysaccharide biosynthesis protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.
  
  
 0.427
Acid_4856
PFAM: polysaccharide biosynthesis protein; KEGG: aba:Acid345_0837 polysaccharide biosynthesis protein.
  
  
 0.427
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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